STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1432Predicted DNA-binding protein; Belongs to the UPF0251 family. (94 aa)    
Predicted Functional Partners:
VF_1433
Hypothetical protein.
  
    0.816
VF_1434
Putative periplasmic protein.
       0.773
VF_1431
Hypothetical protein.
       0.479
VF_2618
Conserved hypothetical protein.
       0.479
sypF
Two-component hybrid sensor histidine kinase; Syp polysaccharide locus.
      
 0.476
vpsR
Sigma-54 dependent transcriptional regulator VpsR.
      
 0.473
sypA
Putative sulphate transporter, anti-sigma factor antagonist; Syp polysaccharide locus.
      
 0.473
sypG
Sigma-54 dependent transcriptional regulator; Syp polysaccharide locus.
      
 0.435
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
      
 0.431
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.