STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aapQPredicted amino-acid transporter permease. (388 aa)    
Predicted Functional Partners:
aapM
Predicted amino-acid transporter permease.
 
0.997
aapP
Predicted amino-acid transporter ATPase.
 
 
 0.988
VF_1532
General L-amino acid-binding protein; Belongs to the bacterial solute-binding protein 3 family.
 
 
 0.987
VF_A0393
Amino acid transport ATP-binding protein.
 
  
 0.805
glnP
Amino acid ABC transporter permease protein.
 
0.687
VF_A0390
Amino acid ABC transporter permease protein.
 
 
0.658
yccA
Inner membrane protein; Belongs to the BI1 family.
       0.649
yecS
Cystine transport system permease protein.
 
 
0.632
yecC
Cystine transport ATP-binding protein.
 
  
 0.516
hisP
Histidine/lysine/arginine/ornithine transporter subunit.
  
   
 0.508
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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