STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1674Oligopeptide-binding protein OppA. (580 aa)    
Predicted Functional Partners:
VF_A0331
Hypothetical protein.
  
     0.710
VF_A0719
Hypothetical protein.
  
     0.690
VF_0634
Predicted metal-dependent hydrolase.
  
     0.649
VF_0303
Hypothetical protein.
  
     0.642
VF_A0197
TPR domain protein.
  
     0.628
VF_A0332
TonB system receptor, putative.
  
     0.612
VF_A0775
Short chain dehydrogenase.
  
     0.612
yihN
Predicted transporter.
  
     0.586
VF_A0156
Hypothetical protein.
  
     0.584
VF_1164
Export ABC transporter permease protein.
  
     0.575
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.