Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_1697 | VF_2628 | VF_1697 | VF_2628 | Latent nuclear antigen. | Hypothetical protein. | 0.547 |
VF_1697 | accD | VF_1697 | VF_1695 | Latent nuclear antigen. | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.606 |
VF_1697 | cvpA | VF_1697 | VF_1692 | Latent nuclear antigen. | Membrane protein required for colicin V production. | 0.554 |
VF_1697 | fliL2 | VF_1697 | VF_2446 | Latent nuclear antigen. | Flagellar basal body-associated protein FliL2; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.560 |
VF_1697 | mshQ2 | VF_1697 | VF_A0075 | Latent nuclear antigen. | MshQ protein. | 0.550 |
VF_1697 | pilN | VF_1697 | VF_2296 | Latent nuclear antigen. | Pili assembly protein PilN. | 0.563 |
VF_1697 | pilQ | VF_1697 | VF_2293 | Latent nuclear antigen. | Pili ecretion protein PilQ. | 0.561 |
VF_1697 | rpoE | VF_1697 | VF_2093 | Latent nuclear antigen. | RNA polymerase, sigma-24 (sigma-E) factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.608 |
VF_1697 | truA | VF_1697 | VF_1696 | Latent nuclear antigen. | Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.797 |
VF_1697 | usg | VF_1697 | VF_1698 | Latent nuclear antigen. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.643 |
VF_2628 | VF_1697 | VF_2628 | VF_1697 | Hypothetical protein. | Latent nuclear antigen. | 0.547 |
VF_2628 | accD | VF_2628 | VF_1695 | Hypothetical protein. | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | 0.773 |
VF_2628 | cvpA | VF_2628 | VF_1692 | Hypothetical protein. | Membrane protein required for colicin V production. | 0.415 |
VF_2628 | truA | VF_2628 | VF_1696 | Hypothetical protein. | Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.773 |
accD | VF_1697 | VF_1695 | VF_1697 | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Latent nuclear antigen. | 0.606 |
accD | VF_2628 | VF_1695 | VF_2628 | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Hypothetical protein. | 0.773 |
accD | cvpA | VF_1695 | VF_1692 | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Membrane protein required for colicin V production. | 0.492 |
accD | truA | VF_1695 | VF_1696 | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Pseudouridylate synthase I; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.848 |
accD | usg | VF_1695 | VF_1698 | acetyl-CoA carboxylase, beta (carboxyltranferase) subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. | Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. | 0.406 |
cvpA | VF_1697 | VF_1692 | VF_1697 | Membrane protein required for colicin V production. | Latent nuclear antigen. | 0.554 |
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