Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_A0681 | clcA | VF_A0681 | VF_1798 | Hypothetical membrane spanning protein. | Chloride channel, voltage-gated. | 0.798 |
clcA | VF_A0681 | VF_1798 | VF_A0681 | Chloride channel, voltage-gated. | Hypothetical membrane spanning protein. | 0.798 |
clcA | msbB | VF_1798 | VF_1799 | Chloride channel, voltage-gated. | Myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM); Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.426 |
clcA | yjcE | VF_1798 | VF_0336 | Chloride channel, voltage-gated. | Predicted cation/proton antiporter. | 0.435 |
msbB | clcA | VF_1799 | VF_1798 | Myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM); Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | Chloride channel, voltage-gated. | 0.426 |
yjcE | clcA | VF_0336 | VF_1798 | Predicted cation/proton antiporter. | Chloride channel, voltage-gated. | 0.435 |