STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_1800HIT family hydrolase. (141 aa)    
Predicted Functional Partners:
slyX
Protein SlyX; Belongs to the SlyX family.
  
    0.607
VF_1136
Hypothetical protein.
  
  
 0.604
msbB
Myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM); Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A.
  
  
 0.580
glnA
Glutamine synthetase.
   
   0.526
VF_2379
Sensory transduction protein kinase.
 
     0.475
argS
arginyl-tRNA synthetase.
  
  
 0.473
yecM
Predicted metal-binding enzyme.
       0.462
cobB
Deacetylase of acetyl-CoA synthetase, NAD-dependent; Belongs to the sirtuin family. Class III subfamily.
    
  0.419
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.