STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2008Tail sheath protein. (377 aa)    
Predicted Functional Partners:
VF_2007
Hypothetical protein.
  
  
 0.898
VF_2022
Phage protein.
 
  
 0.829
VF_2027
Hypothetical protein.
 
    0.806
VF_2026
Putative phage tail protein.
 
    0.804
VF_2025
Putative phage baseplate assembly protein.
 
    0.803
VF_2009
Hypothetical protein.
       0.802
VF_2010
Hypothetical protein.
       0.802
VF_2011
Hypothetical protein.
       0.802
VF_2640
Hypothetical protein.
       0.802
VF_2004
Hypothetical protein.
 
   
 0.790
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.