STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VF_2015Probable capsid portal protein. (313 aa)    
Predicted Functional Partners:
VF_2014
Terminase, ATPase subunit.
 
    0.997
VF_2012
Major capsid protein.
 
  
 0.995
VF_2013
Probable capsid scaffolding protein.
 
    0.994
VF_2005
Putative phage tail protein.
  
    0.961
VF_2009
Hypothetical protein.
  
    0.933
VF_2006
Putative phage R protein.
  
    0.929
VF_2036
Possible phage regulatory protein (CII).
   
    0.823
VF_2004
Hypothetical protein.
 
    0.761
VF_2041
DNA integration/recombination/invertion protein.
  
    0.725
VF_A0980
Hypothetical protein.
  
    0.595
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.