STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiDPyruvate formate lyase subunit; Acts as a radical domain for damaged PFL and possibly other radical proteins. (125 aa)    
Predicted Functional Partners:
adhE
Fused acetaldehyde-CoA dehydrogenase/iron-dependent alcohol dehydrogenase/pyruvate-formate lyase deactivase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.834
VF_A0625
Hypothetical protein.
   
   0.793
pflA
Pyruvate formate lyase activating enzyme 1; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
  
     0.774
yjjW
Predicted pyruvate formate lyase activating enzyme.
  
     0.761
dmsA
Dimethyl sulfoxide reductase, anaerobic, subunit A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
      
 0.650
ndh
Respiratory NADH dehydrogenase 2/cupric reductase.
      
 0.552
pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.522
gltA
Citrate synthase; Belongs to the citrate synthase family.
     
  0.499
pykF
Pyruvate kinase I; Belongs to the pyruvate kinase family.
     
  0.499
maeB
Fused malic enzyme predicted oxidoreductase/predicted phosphotransacetylase.
     
  0.499
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.