STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiSChitin sensor histidine kinase ChiS. (1126 aa)    
Predicted Functional Partners:
arcB
Hybrid sensory histidine kinase in two-component regulatory system with ArcA.
 
 
0.987
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
 
 
0.985
torS
Hybrid sensory histidine kinase in two-component regulatory system with TorR.
 
 
0.968
gacS
Hybrid sensory histidine kinase, in two-component regulatory system with GacA.
 
 
0.965
VF_2379
Sensory transduction protein kinase.
  
 
 0.951
sypF
Two-component hybrid sensor histidine kinase; Syp polysaccharide locus.
 
 
0.949
VF_A0233
Hypothetical protein.
 
 
0.828
luxQ
Membrane-bound sensor histidine kinase LuxQ.
 
 
0.826
VF_1296
Hybrid sensory histidine kinase.
 
 
0.825
VF_A1016
Two component sensory histidine kinase.
 
 
0.825
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.