STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VF_2139Chitooligosaccharide-binding protein. (557 aa)    
Predicted Functional Partners:
VF_2140
Chitooligosaccharide transport system permease protein.
 
 
 0.966
VF_2141
Chitooligosaccharide transport system permease protein.
 
 
 0.965
VF_2143
Chitooligosaccharide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.918
VF_2142
Chitooligosaccharide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.866
VF_2144
Endochitinase.
 
     0.821
VF_2145
N-acetylglucosamine kinase.
 
     0.779
VF_A0200
Chitooligosaccharide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily.
 
 
 0.726
dppB
Dipeptide transport system permease protein DppB.
 
 
 0.707
VF_0680
Oligopeptide transport system permease protein OppB.
 
 
 0.703
dppC
Dipeptide transport system permease protein DppC.
 
 
 0.700
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: medium (56%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.