STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2140Chitooligosaccharide transport system permease protein. (328 aa)    
Predicted Functional Partners:
VF_2141
Chitooligosaccharide transport system permease protein.
  
 0.978
VF_2142
Chitooligosaccharide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  
 0.969
VF_2143
Chitooligosaccharide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 0.962
VF_2139
Chitooligosaccharide-binding protein.
 
 
 0.931
VF_0679
Oligopeptide transport system permease protein OppC.
 
  
 0.880
oppC
Oligopeptide transport system permease protein OppC.
  
 0.872
dppC
Dipeptide transport system permease protein DppC.
  
 0.871
VF_A0200
Chitooligosaccharide transport ATP-binding protein oppF; Belongs to the ABC transporter superfamily.
 
  
 0.869
VF_A0199
Chitooligosaccharide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
  
 0.863
VF_0691
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
  
 0.857
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.