STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2148Phosphoglucomutase. (470 aa)    
Predicted Functional Partners:
VF_2147
N,N'-diacetylchitobiose phosphorylase.
 
   
 0.899
VF_A0715
Chitodextrinase precursor.
      
 0.765
VF_1146
Chitodextrinase precursor.
      
 0.753
VF_0145
Mannose-1-phosphate guanyltransferase.
  
 0.725
VF_2144
Endochitinase.
 
     0.723
VF_2143
Chitooligosaccharide transport ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     0.686
VF_2140
Chitooligosaccharide transport system permease protein.
 
     0.684
VF_2145
N-acetylglucosamine kinase.
  
  
 0.684
VF_2141
Chitooligosaccharide transport system permease protein.
 
     0.676
nagC
DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine.
 
  
 0.586
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.