VF_2149 protein (Aliivibrio fischeri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

VF_2149

iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (344 aa)

Predicted Functional Partners:

VF_2150

0.995

VF_2151

0.991

potB

0.939

potC

0.897

VF_A1090

0.841

potD1

0.757

potD2

0.755

ybhS

0.737

amtB

0.594

thiP

0.574

Your Current Organism:

Aliivibrio fischeri

NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
VF_2149	VF_2150	VF_2149	VF_2150	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III)-transport system permease protein SfuB.	0.995
VF_2149	VF_2151	VF_2149	VF_2151	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	iron(III) ABC transporter, periplasmic binding protein.	0.991
VF_2149	VF_A1090	VF_2149	VF_A1090	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	ABC transporter permease protein.	0.841
VF_2149	amtB	VF_2149	VF_2152	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Ammonium transporter.	0.594
VF_2149	potB	VF_2149	VF_1316	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine transporter permease protein.	0.939
VF_2149	potC	VF_2149	VF_1317	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine transporter permease protein.	0.897
VF_2149	potD1	VF_2149	VF_1319	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine transporter binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.757
VF_2149	potD2	VF_2149	VF_1318	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Polyamine transporter binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.755
VF_2149	thiP	VF_2149	VF_0268	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Thiamine/thiamine pyrophosphate ABC transporter, permease protein ThiP/SfuB.	0.574
VF_2149	ybhS	VF_2149	VF_A0112	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	Predicted transporter subunit: membrane component of ABC superfamily.	0.737
VF_2150	VF_2149	VF_2150	VF_2149	iron(III)-transport system permease protein SfuB.	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.995
VF_2150	VF_2151	VF_2150	VF_2151	iron(III)-transport system permease protein SfuB.	iron(III) ABC transporter, periplasmic binding protein.	0.996
VF_2150	amtB	VF_2150	VF_2152	iron(III)-transport system permease protein SfuB.	Ammonium transporter.	0.546
VF_2151	VF_2149	VF_2151	VF_2149	iron(III) ABC transporter, periplasmic binding protein.	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.991
VF_2151	VF_2150	VF_2151	VF_2150	iron(III) ABC transporter, periplasmic binding protein.	iron(III)-transport system permease protein SfuB.	0.996
VF_2151	amtB	VF_2151	VF_2152	iron(III) ABC transporter, periplasmic binding protein.	Ammonium transporter.	0.686
VF_2151	thiP	VF_2151	VF_0268	iron(III) ABC transporter, periplasmic binding protein.	Thiamine/thiamine pyrophosphate ABC transporter, permease protein ThiP/SfuB.	0.598
VF_A1090	VF_2149	VF_A1090	VF_2149	ABC transporter permease protein.	iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.	0.841
VF_A1090	potB	VF_A1090	VF_1316	ABC transporter permease protein.	Polyamine transporter permease protein.	0.971
VF_A1090	potD1	VF_A1090	VF_1319	ABC transporter permease protein.	Polyamine transporter binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.	0.885

page 1 of 3

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About