STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2149iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
VF_2150
iron(III)-transport system permease protein SfuB.
 
 
 0.989
VF_2151
iron(III) ABC transporter, periplasmic binding protein.
 
 
 0.988
potB
Polyamine transporter permease protein.
 
 
 0.855
potC
Polyamine transporter permease protein.
 
  
 0.813
potD1
Polyamine transporter binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.756
potD2
Polyamine transporter binding protein; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family.
 
  
 0.754
ybhS
Predicted transporter subunit: membrane component of ABC superfamily.
 
   
  0.738
VF_A1090
ABC transporter permease protein.
 
  
 0.712
modB
Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.564
sapD
Peptide transport system ATP-binding protein SapD; Belongs to the ABC transporter superfamily.
 
   
0.542
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (30%) [HD]