STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2150iron(III)-transport system permease protein SfuB. (543 aa)    
Predicted Functional Partners:
VF_2151
iron(III) ABC transporter, periplasmic binding protein.
 
 
 0.996
VF_2149
iron(III)-transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.995
afuC
CP4-6 prophage; predicted ferric transporter subunit; Belongs to the ABC transporter superfamily.
 
 
 0.678
potA
Polyamine transporter ATPase protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
  
 
 0.634
VF_A1087
ABC transporter substrate-binding protein.
  
  
 0.600
amtB
Ammonium transporter.
 
     0.546
thiQ
Thiamine ABC transporter, ATP-binding protein ThiQ/SfuC; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
  
  
 0.526
thiB
Thiamine/thiamine pyrophosphate ABC transporter, thiamine/thiamine pyrophospate-binding protein ThiB/TbpA/SfuA.
  
  
 0.506
glnK
Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family.
       0.463
VF_1191
Predicted thiol oxidoreductase.
  
    0.421
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.