STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amtBAmmonium transporter. (409 aa)    
Predicted Functional Partners:
glnK
Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family.
 
 0.999
glnB
Regulatory protein P-II for glutamine synthetase.
 
 0.998
ntrB
Nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC.
  
 
 0.812
glnA
Glutamine synthetase.
  
  
 0.808
gltB
Glutamate synthase, large subunit.
 
  
 0.774
VF_0774
Nitrite transporter.
   
  
 0.729
VF_1049
Putative DNA methylase; Belongs to the N(4)/N(6)-methyltransferase family.
      
 0.692
ureC
Urea amidohydrolase, alpha subunit; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.664
VF_A1014
EAL domain protein; Likely cotranscribed with rpoQ, quorum-sensing-regulated (C8-HSL).
      0.619
flgA
Flagellar P-ring chaperone FlgA.
      
 0.549
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.