Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VF_1421 | glnK | VF_1421 | VF_2153 | Transporter. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.577 |
| VF_A0197 | glnK | VF_A0197 | VF_2153 | TPR domain protein. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.577 |
| VF_A0197 | mshN | VF_A0197 | VF_0361 | TPR domain protein. | MSHA biogenesis protein MshN. | 0.596 |
| amtB | glnA | VF_2152 | VF_0098 | Ammonium transporter. | Glutamine synthetase. | 0.808 |
| amtB | glnD | VF_2152 | VF_1964 | Ammonium transporter. | Uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.428 |
| amtB | glnK | VF_2152 | VF_2153 | Ammonium transporter. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.999 |
| amtB | ntrB | VF_2152 | VF_0096 | Ammonium transporter. | Nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC. | 0.812 |
| argA | argB | VF_0585 | VF_2305 | Fused acetylglutamate kinase-like (inactive)/amino acid N-acetyltransferase. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.993 |
| argA | glnA | VF_0585 | VF_0098 | Fused acetylglutamate kinase-like (inactive)/amino acid N-acetyltransferase. | Glutamine synthetase. | 0.469 |
| argA | glnK | VF_0585 | VF_2153 | Fused acetylglutamate kinase-like (inactive)/amino acid N-acetyltransferase. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.761 |
| argB | argA | VF_2305 | VF_0585 | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | Fused acetylglutamate kinase-like (inactive)/amino acid N-acetyltransferase. | 0.993 |
| argB | glnK | VF_2305 | VF_2153 | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.749 |
| glnA | amtB | VF_0098 | VF_2152 | Glutamine synthetase. | Ammonium transporter. | 0.808 |
| glnA | argA | VF_0098 | VF_0585 | Glutamine synthetase. | Fused acetylglutamate kinase-like (inactive)/amino acid N-acetyltransferase. | 0.469 |
| glnA | glnD | VF_0098 | VF_1964 | Glutamine synthetase. | Uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | 0.532 |
| glnA | glnK | VF_0098 | VF_2153 | Glutamine synthetase. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.736 |
| glnA | ntrB | VF_0098 | VF_0096 | Glutamine synthetase. | Nitrogen regulatory sensory histidine kinase in two-component regulatory system with NtrC. | 0.749 |
| glnD | amtB | VF_1964 | VF_2152 | Uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | Ammonium transporter. | 0.428 |
| glnD | glnA | VF_1964 | VF_0098 | Uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | Glutamine synthetase. | 0.532 |
| glnD | glnK | VF_1964 | VF_2153 | Uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen assimilation and metabolism. | Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family. | 0.787 |
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