STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdaRDNA-binding transcriptional activator. (381 aa)    
Predicted Functional Partners:
VF_2157
Glycerate kinase; Belongs to the glycerate kinase type-1 family.
 
  
 0.897
gntP
Fructuronate transporter.
 
   
 0.895
yacL
Hypothetical protein yacL; Belongs to the UPF0231 family.
       0.582
VF_A1041
Protein YgiW precursor.
  
     0.492
glnK
Nitrogen regulatory protein GlnK; Belongs to the P(II) protein family.
       0.442
amtB
Ammonium transporter.
       0.415
yjjI
Conserved protein.
  
     0.412
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.