Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| VF_2159 | clpA | VF_2159 | VF_1765 | Serine protease. | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Belongs to the ClpA/ClpB family. | 0.593 |
| VF_2159 | dnaJ | VF_2159 | VF_1993 | Serine protease. | Chaperone Hsp40/DnaJ, co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent intera [...] | 0.564 |
| VF_2159 | infB | VF_2159 | VF_0486 | Serine protease. | Fused protein chain initiation factor 2, IF2: membrane protein/conserved protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.562 |
| VF_2159 | msbB | VF_2159 | VF_1799 | Serine protease. | Myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM); Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | 0.522 |
| VF_2159 | nlpB | VF_2159 | VF_1917 | Serine protease. | Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.710 |
| VF_2159 | pldA | VF_2159 | VF_1556 | Serine protease. | Outer membrane phospholipase A; Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities. Belongs to the phospholipase A1 family. | 0.549 |
| VF_2159 | rseP | VF_2159 | VF_1955 | Serine protease. | Membrane-associated zinc protease (RseP, YaeL). | 0.567 |
| VF_2159 | rsmE | VF_2159 | VF_0436 | Serine protease. | Predicted protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.535 |
| VF_2159 | yfgL | VF_2159 | VF_0632 | Serine protease. | Lipoprotein component of outer membrane protein assembly complex; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.778 |
| VF_2159 | yfiO | VF_2159 | VF_0563 | Serine protease. | Lipoprotein component of outer membrane protein assembly complex; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.733 |
| clpA | VF_2159 | VF_1765 | VF_2159 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Belongs to the ClpA/ClpB family. | Serine protease. | 0.593 |
| clpA | dnaJ | VF_1765 | VF_1993 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Belongs to the ClpA/ClpB family. | Chaperone Hsp40/DnaJ, co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent intera [...] | 0.758 |
| clpA | infB | VF_1765 | VF_0486 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Belongs to the ClpA/ClpB family. | Fused protein chain initiation factor 2, IF2: membrane protein/conserved protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.737 |
| dnaJ | VF_2159 | VF_1993 | VF_2159 | Chaperone Hsp40/DnaJ, co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent intera [...] | Serine protease. | 0.564 |
| dnaJ | clpA | VF_1993 | VF_1765 | Chaperone Hsp40/DnaJ, co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent intera [...] | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Belongs to the ClpA/ClpB family. | 0.758 |
| dnaJ | rsmE | VF_1993 | VF_0436 | Chaperone Hsp40/DnaJ, co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent intera [...] | Predicted protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.436 |
| infB | VF_2159 | VF_0486 | VF_2159 | Fused protein chain initiation factor 2, IF2: membrane protein/conserved protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Serine protease. | 0.562 |
| infB | clpA | VF_0486 | VF_1765 | Fused protein chain initiation factor 2, IF2: membrane protein/conserved protein; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Belongs to the ClpA/ClpB family. | 0.737 |
| msbB | VF_2159 | VF_1799 | VF_2159 | Myristoyl-acyl carrier protein (ACP)-dependent acyltransferase (MsbB, LpxM); Catalyzes the transfer of myristate from myristoyl-acyl carrier protein (ACP) to Kdo(2)-(lauroyl)-lipid IV(A) to form Kdo(2)- lipid A. | Serine protease. | 0.522 |
| nlpB | VF_2159 | VF_1917 | VF_2159 | Lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Serine protease. | 0.710 |
page 1 of 2