STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilAPilin subunit PilA; Belongs to the N-Me-Phe pilin family. (134 aa)    
Predicted Functional Partners:
pilT
Predicted transporter.
 
   
 0.908
pilC
Pilus assembly protein PilC.
 
   
 0.904
pilB
Pilus assembly protein PilB.
 
  
 0.899
pilD
Type 4 prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.871
pilQ
Pili ecretion protein PilQ.
 
   
 0.763
tfoX1
DNA transformation protein TfoX1 (Sxy); Required for DNA transformation jointly with TfoX2.
      
 0.698
pilM
Pili assembly protein PilM.
 
   
 0.679
pilU
Pili retraction protein PilU.
  
   
 0.647
pilO
Pili assembly protein PilO.
  
   
 0.567
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.551
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.