STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pitAPhosphate transporter, low-affinity. (426 aa)    
Predicted Functional Partners:
VF_2239
Hypothetical protein.
 
  
 0.988
VF_1531
Ferrochelatase.
  
  
 0.701
mltA
Membrane-bound lytic murein transglycosylase A; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
      
 0.692
ompT
Omptin family protease OmpT.
  
   
 0.555
htrG
Predicted signal transduction protein (SH3 domain).
       0.533
ygiF
Predicted adenylate cyclase.
       0.523
pstA
Phosphate transport system permease protein PstA.
     
 0.481
hisB
Fused histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase; In the N-terminal section; belongs to the histidinol- phosphatase family.
     
 0.471
ompU
Outer membrane protein U porin OmpU.
      
 0.466
chiS
Chitin sensor histidine kinase ChiS.
     
 0.456
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.