STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2261GGDEF domain protein. (631 aa)    
Predicted Functional Partners:
torS
Hybrid sensory histidine kinase in two-component regulatory system with TorR.
 
 
 0.934
VF_A1038
Adjacent to Syp polysaccharide locus.
 
 
 0.930
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
 
 
 0.895
VF_0087
Sensory transduction protein kinase.
 
 
 0.879
VF_0091
GGDEF domain protein.
 
 
 0.878
VF_0094
GGDEF domain protein.
 
 
 0.878
csrD
Conserved inner membrane protein.
 
 
 0.848
VF_A0344
EAL domain protein.
 
 0.839
VF_A1166
GGDEF/EAL domains protein.
 
 
 0.833
VF_1367
Two-component response regulator.
 
 
 
 0.824
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.