STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yijDConserved inner membrane protein. (124 aa)    
Predicted Functional Partners:
holD
DNA polymerase III, psi subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The exact function of the psi subunit is unknown.
  
     0.762
VF_0662
Hypothetical protein; Belongs to the UPF0253 family.
  
     0.761
VF_0315
Opacity associated protein OapA.
  
     0.760
frsA
Hydrolase, binds to enzyme IIA(Glc); Belongs to the UPF0255 family.
  
     0.760
yfbU
Conserved protein; Belongs to the UPF0304 family.
  
     0.758
VF_2099
Hypothetical protein.
  
     0.753
VF_0330
Hypothetical protein.
  
     0.747
yihD
Conserved protein.
  
     0.733
VF_1050
Protein YciN.
  
     0.728
uspB
Universal stress (ethanol tolerance) protein B.
  
     0.726
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.