STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2496Serine/threonine protein kinase. (441 aa)    
Predicted Functional Partners:
VF_0991
Protein phosphatase 2C.
 
 
 0.897
rpoE5
RNA polymerase ECF-type sigma factor.
 
 
 
 0.805
VF_2497
Hypothetical protein.
  
  
 0.694
VF_2499
Hypothetical protein.
       0.667
VF_1230
Hypothetical protein.
   
 
 0.527
VF_1934
Ferredoxin-dependent glutamate synthase.
   
 
 0.527
VF_A0952
Hypothetical protein.
   
 
 0.527
rnfA
Predicted inner membrane subunit (Rnf/Rsx reducing system); Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
  
    0.460
VF_1418
Hypothetical protein.
  
 0.453
VF_0997
Phospho-specific protein-protein interaction motif FHA.
 
  
 0.445
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.