STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2505Permease. (258 aa)    
Predicted Functional Partners:
VF_2506
Membrane protein, putative.
 
     0.942
VF_2502
Transcriptional regulator.
 
     0.917
VF_2503
Transcriptional regulator.
 
     0.917
VF_2504
Hypothetical cytosolic protein.
 
     0.917
VF_2507
Dihydroorotase.
 
     0.909
VF_2508
L-seryl-tRNA selenium transferase family.
 
     0.909
VF_2509
2-dehydro-3-deoxyphosphogluconate aldolase.
 
     0.905
VF_2510
PTS system, mannitol (cryptic)-specific IIA component.
 
     0.832
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.