STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_2549Similarity to Gram-positive sporulation control protein Spo0M. (262 aa)    
Predicted Functional Partners:
VF_A0013
Chitin-binding protein.
  
     0.633
yqfA
Predicted oxidoreductase, inner membrane subunit.
       0.609
chiA
Endochitinase.
  
     0.601
VF_0986
Chitodextrinase.
  
     0.535
VF_1629
Hypothetical protein.
  
     0.476
VF_2497
Hypothetical protein.
  
     0.472
VF_2662
Hypothetical protein.
       0.462
VF_A1171
ParB family protein; Belongs to the ParB family.
  
     0.446
VF_1520
Hypothetical protein.
  
     0.444
yihD
Conserved protein.
       0.423
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.