STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iucDAerobactin siderophore biosynthesis protein IucD. (432 aa)    
Predicted Functional Partners:
iucB
Aerobactin siderophore synthesis protein IucB.
 
 0.999
iucC
Aerobactin siderophore biosynthesis protein IucC.
 
  
 0.997
iucA
Aerobactin siderophore biosynthesis protein IucA.
 
  
 0.996
iutA
Ferric aerobactin receptor precursor IutA.
     
 0.865
fhuD
Iron-hydroxamate transporter subunit.
 
   
 0.834
fhuB
Fused iron-hydroxamate transporter subunits of ABC superfamily: membrane components; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.769
fhuC
Iron-hydroxamate transporter subunit.
     
 0.655
VF_A0191
FhuE receptor precursor.
  
  
 0.624
VF_A0157
Permease.
     
 0.613
ectB
Diaminobutyrate--2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.575
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.