STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_A0176Transcriptional regulator, ArsR family. (103 aa)    
Predicted Functional Partners:
VF_A0175
Hypothetical membrane spanning protein.
 
  
 0.814
VF_1195
Conserved hypothetical protein.
  
  
 0.768
VF_2503
Transcriptional regulator.
      
 0.753
ogt
O-6-alkylguanine-DNA:cysteine-protein methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated.
       0.697
VF_1396
DNA-binding response regulator.
      
 0.592
eptA
Predicted metal dependent hydrolase.
      
 0.531
toxR
Transcriptional activator ToxR.
  
   
 0.496
nagC
DNA-binding transcriptional dual regulator, repressor of N-acetylglucosamine.
      
 0.478
VF_1795
Outer membrane protein C.
      
 0.476
phoP
DNA-binding response regulator in two-component regulatory system with PhoQ.
      
 0.474
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.