STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_A0441Hypothetical membrane spanning protein. (345 aa)    
Predicted Functional Partners:
VF_1528
Probable transcriptional regulator SyrB.
  
     0.767
VF_A0272
Integral membrane protein; Transcriptional regulator, LysR family, amber nonsense codon to create pseudogene.
  
     0.663
VF_0609
Outer membrane protein S.
  
     0.651
VF_0503
Hypothetical protein.
  
     0.596
VF_0600
Hypothetical protein.
  
     0.590
yiaW
Conserved inner membrane protein.
  
    0.583
viaA
Stimulator of RavA ATPase activity, VWA domain containing.
  
     0.566
VF_2270
Hypothetical protein.
  
     0.556
VF_2271
Maltose operon periplasmic protein precursor.
  
     0.534
VF_0296
Transcriptional regulator, TetR family.
  
     0.511
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.