STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompU2Outer membrane protein U paralog, OmpU2. (307 aa)    
Predicted Functional Partners:
frsA
Hydrolase, binds to enzyme IIA(Glc); Belongs to the UPF0255 family.
  
  
 0.771
VF_A0606
Hypothetical protein; Belongs to the UPF0265 family.
  
     0.727
zapB
Transcriptional regulator; Non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.
  
     0.706
viaA
Stimulator of RavA ATPase activity, VWA domain containing.
  
     0.706
VF_1438
Predicted membrane protein.
  
     0.691
vacJ
VacJ lipoprotein.
   
 
 0.676
yijD
Conserved inner membrane protein.
  
     0.674
yihD
Conserved protein.
  
     0.666
VF_0722
Putative lipoprotein.
  
     0.660
VF_0635
Conserved hypothetical protein.
  
     0.638
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.