STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_A0560Two component sensor histidine kinase. (481 aa)    
Predicted Functional Partners:
VF_A0561
Two component response regulator; Similar to BasR.
 
   0.902
VF_A0562
Hypothetical protein.
       0.852
VF_A0563
Hypothetical protein.
       0.852
arcB
Hybrid sensory histidine kinase in two-component regulatory system with ArcA.
  
 
 0.774
rscS
Hybrid sensor kinase RscS; Activator of syp locus genes.
  
 
 0.720
VF_A0037
Hypothetical protein.
  
     0.708
VF_2497
Hypothetical protein.
  
     0.702
VF_A1171
ParB family protein; Belongs to the ParB family.
  
     0.691
VF_A0564
TraF protein.
       0.686
VF_1629
Hypothetical protein.
  
     0.669
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.