STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_A0728Acetyltransferase. (92 aa)    
Predicted Functional Partners:
VF_A0729
Transporter, MFS superfamily.
       0.685
yfcH
Conserved protein with NAD(P)-binding Rossmann-fold domain.
  
    0.638
rpiA
Ribose 5-phosphate isomerase, constitutive; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
    0.611
VF_A0727
Hypothetical cytosolic protein.
       0.563
yqhD
Alcohol dehydrogenase, NAD(P)-dependent.
   
    0.560
VF_A0726
NAD-dependent oxidoreductase.
       0.499
abgR
Predicted DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.466
sagP
Arginine deiminase SagP (ArcA).
   
    0.400
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.