STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgRPredicted DNA-binding transcriptional regulator; Belongs to the LysR transcriptional regulatory family. (295 aa)    
Predicted Functional Partners:
VF_A0911
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.772
VF_1378
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.770
ycjZ
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.768
VF_0877
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.767
VF_1321
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.767
VF_1690
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.764
oxyR
Oxidative stress-responsive DNA-binding transcriptional regulator OxyR; Belongs to the LysR transcriptional regulatory family.
  
     0.763
VF_A0387
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.763
VF_1063
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.761
VF_1510
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.761
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.