STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
treCtrehalose-6-P hydrolase. (543 aa)    
Predicted Functional Partners:
malS
Alpha-amylase.
  
  
  0.966
malQ
4-alpha-glucanotransferase (amylomaltase).
  
 
 0.933
malZ
Maltodextrin glucosidase; Belongs to the glycosyl hydrolase 13 family.
  
  
 
0.928
VF_A0301
Alpha-galactosidase.
 
 
 0.927
VF_1132
Alpha-amylase.
  
  
 0.912
malF2
Maltose transport system permease protein MalF.
 
  
 0.629
glgX
Glycogen debranching enzyme; Belongs to the glycosyl hydrolase 13 family.
 
  
 0.619
malG2
Maltose transport system permease protein MalG.
 
  
 0.608
ydhF
Predicted oxidoreductase.
 
     0.558
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
 
  
 0.548
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.