STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJribosomal-protein-S5-alanine N-acetyltransferase. (185 aa)    
Predicted Functional Partners:
tyrR
DNA-binding transcriptional regulator, tyrosine-binding.
       0.846
rimI
Acetylase for 30S ribosomal subunit protein S18; Acetylates the N-terminal alanine of ribosomal protein S18.
  
  
 0.815
VF_A0749
Hypothetical protein.
       0.697
yhiQ
SAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA.
  
  
 0.600
ybgA
Conserved protein.
  
    0.560
phr
Deoxyribodipyrimidine photolyase Phr, FAD-binding; Belongs to the DNA photolyase family.
       0.524
rimL
ribosomal-protein-L7/L12-serine acetyltransferase.
  
   
0.488
elaA
Predicted acyltransferase with acyl-CoA N-acyltransferase domain.
      
 0.478
fumB
Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
       0.462
VF_1519
Hypothetical protein.
       0.462
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.