STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
adrAGGDEF domain protein. (320 aa)    
Predicted Functional Partners:
VF_A0795
Two component response regulator.
 
    0.915
VF_A0344
EAL domain protein.
 
  
 0.913
VF_A1014
EAL domain protein; Likely cotranscribed with rpoQ, quorum-sensing-regulated (C8-HSL).
 
  
 0.895
VF_A0879
EAL domain protein.
  
  
 0.887
VF_A0551
EAL domain protein.
  
  
 0.885
VF_A1076
EAL domain protein.
  
  
 0.884
VF_A0706
EAL domain protein.
  
  
 0.860
VF_A0506
Two component response regulator.
 
    0.809
VF_0094
GGDEF domain protein.
 
 
 0.800
VF_A1038
Adjacent to Syp polysaccharide locus.
  
   0.797
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.