STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_A0871Hypothetical protein. (159 aa)    
Predicted Functional Partners:
tcpD
Toxin coregulated pilus biosynthesis protein TcpD.
       0.781
tcpQ
Toxin coregulated pilus biosynthesis protein TcpY/TcpQ.
       0.781
tcpB
Toxin coregulated pilus biosynthesis protein TcpB.
       0.781
tcpC
Toxin coregulated pilus outer membrane protein TcpC.
       0.773
tcpS
Toxin coregulated pilus biosynthesis protein TcpS.
       0.761
tcpF
Toxin coregulated pilus biosynthesis protein TcpF.
       0.752
tcpE
Toxin coregulated pilus biosynthesis protein TcpE.
       0.752
tcpT
Toxin coregulated pilus biosynthesis protein TcpT.
       0.752
tcpA
Toxin coregulated pilin subunit precursor TcpA.
       0.724
VF_A0876
Hypothetical protein.
       0.419
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.