Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yidJPredicted sulfatase/phosphatase. (518 aa)    
Predicted Functional Partners:
VF_A0993
Arylsulfatase regulator (Fe-S oxidoreductase).
 
    0.741
VF_A0208
Arylsulfatase regulator (Fe-S oxidoreductase).
 
    0.710
VF_A0991
Hypothetical protein.
 
     0.703
VF_1417
Arylsulfatase regulator (Fe-S oxidoreductase).
 
    0.682
aslB
Predicted regulator of arylsulfatase activity.
 
    0.665
VF_A0996
Hypothetical protein.
 
     0.652
VF_A1008
Hypothetical protein.
  
    0.557
nanA
N-acetylneuraminate lyase.
  
   
 0.512
VF_A0834
NirV precursor.
 
 
   0.444
VF_1418
Hypothetical protein.
 
 
   0.429
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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