STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VF_A1108Hypothetical protein. (173 aa)    
Predicted Functional Partners:
VF_A0319
Hydroxymethylpyrimidine-binding protein.
  
  
 0.531
VF_A1110
Hypothetical protein.
       0.512
metE
5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.508
VF_1589
Hypothetical protein.
  
     0.481
VF_A1109
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
       0.474
VF_1801
Hypothetical protein.
       0.462
yfcM
Conserved protein.
       0.462
yfcG
Predicted glutathione S-transferase.
  
  
 0.448
VF_1083
Predicted glutathione S-transferase; Belongs to the GST superfamily.
  
  
 0.448
yghU
Glutathione transferase-like protein possibly involved in glutathionylspermidine metabolism.
  
  
 0.448
Your Current Organism:
Aliivibrio fischeri
NCBI taxonomy Id: 312309
Other names: A. fischeri ES114, Aliivibrio fischeri ES114, Vibrio fischeri ES114, Vibrio fischeri str. ES114, Vibrio fischeri strain ES114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.