Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
VF_A0768 | VF_A1118 | VF_A0768 | VF_A1118 | Cysteine desulfhydrase. | Hypothetical protein. | 0.899 |
VF_A0768 | gntY | VF_A0768 | VF_2461 | Cysteine desulfhydrase. | Predicted gluconate transport associated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.408 |
VF_A0768 | iscA | VF_A0768 | VF_0619 | Cysteine desulfhydrase. | Fe-S cluster assembly protein IscA; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.423 |
VF_A1117 | VF_A1118 | VF_A1117 | VF_A1118 | Hypothetical protein. | Hypothetical protein. | 0.952 |
VF_A1118 | VF_A0768 | VF_A1118 | VF_A0768 | Hypothetical protein. | Cysteine desulfhydrase. | 0.899 |
VF_A1118 | VF_A1117 | VF_A1118 | VF_A1117 | Hypothetical protein. | Hypothetical protein. | 0.952 |
VF_A1118 | csdA | VF_A1118 | VF_0590 | Hypothetical protein. | Cysteine sulfinate desulfinase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | 0.899 |
VF_A1118 | cyaY | VF_A1118 | VF_2486 | Hypothetical protein. | Frataxin, iron-binding and oxidizing protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | 0.936 |
VF_A1118 | djlA | VF_A1118 | VF_0290 | Hypothetical protein. | DnaJ-like protein, membrane anchored; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.892 |
VF_A1118 | gntY | VF_A1118 | VF_2461 | Hypothetical protein. | Predicted gluconate transport associated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.938 |
VF_A1118 | hscB | VF_A1118 | VF_0620 | Hypothetical protein. | DnaJ-like molecular chaperone specific for Fe-S scaffold IscU; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.892 |
VF_A1118 | iscA | VF_A1118 | VF_0619 | Hypothetical protein. | Fe-S cluster assembly protein IscA; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.628 |
VF_A1118 | iscS | VF_A1118 | VF_0617 | Hypothetical protein. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.986 |
VF_A1118 | yccS | VF_A1118 | VF_1623 | Hypothetical protein. | Predicted inner membrane protein. | 0.638 |
csdA | VF_A1118 | VF_0590 | VF_A1118 | Cysteine sulfinate desulfinase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Hypothetical protein. | 0.899 |
csdA | gntY | VF_0590 | VF_2461 | Cysteine sulfinate desulfinase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Predicted gluconate transport associated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.408 |
csdA | iscA | VF_0590 | VF_0619 | Cysteine sulfinate desulfinase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. | Fe-S cluster assembly protein IscA; Is able to transfer iron-sulfur clusters to apo-ferredoxin. Multiple cycles of [2Fe2S] cluster formation and transfer are observed, suggesting that IscA acts catalytically. Recruits intracellular free iron so as to provide iron for the assembly of transient iron-sulfur cluster in IscU in the presence of IscS, L-cysteine and the thioredoxin reductase system; Belongs to the HesB/IscA family. | 0.445 |
cyaY | VF_A1118 | VF_2486 | VF_A1118 | Frataxin, iron-binding and oxidizing protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | Hypothetical protein. | 0.936 |
cyaY | gntY | VF_2486 | VF_2461 | Frataxin, iron-binding and oxidizing protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | Predicted gluconate transport associated protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins. | 0.632 |
cyaY | hscB | VF_2486 | VF_0620 | Frataxin, iron-binding and oxidizing protein; Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis. | DnaJ-like molecular chaperone specific for Fe-S scaffold IscU; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.822 |
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