CRE_08699 protein (Caenorhabditis remanei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CRE_08699

Uncharacterized protein. (440 aa)

Predicted Functional Partners:

Cre-ash-2

0.728

CRE_26573

0.727

CRE_21129

0.719

Cre-mes-6

0.719

Cre-rba-1

0.706

Cre-utx-1

0.702

CRE_14303

0.702

Cre-lin-53

0.693

Cre-htz-1

0.688

Cre-his-31

0.676

Your Current Organism:

Caenorhabditis remanei

NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CRE_08699	CRE_14303	E3LJE8	E3NEX8	Uncharacterized protein.	Uncharacterized protein.	0.702
CRE_08699	CRE_21129	E3LJE8	E3MEW1	Uncharacterized protein.	Uncharacterized protein.	0.719
CRE_08699	CRE_26573	E3LJE8	E3LRC5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.727
CRE_08699	Cre-ash-2	E3LJE8	E3LRL9	Uncharacterized protein.	CRE-ASH-2 protein.	0.728
CRE_08699	Cre-his-31	E3LJE8	E3LKS2	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.676
CRE_08699	Cre-htz-1	E3LJE8	E3M600	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.688
CRE_08699	Cre-lin-53	E3LJE8	E3M3S6	Uncharacterized protein.	CRE-LIN-53 protein.	0.693
CRE_08699	Cre-mes-6	E3LJE8	E3NDJ1	Uncharacterized protein.	CRE-MES-6 protein.	0.719
CRE_08699	Cre-rba-1	E3LJE8	E3M3S5	Uncharacterized protein.	CRE-RBA-1 protein.	0.706
CRE_08699	Cre-utx-1	E3LJE8	E3MUE5	Uncharacterized protein.	CRE-UTX-1 protein.	0.702
CRE_14303	CRE_08699	E3NEX8	E3LJE8	Uncharacterized protein.	Uncharacterized protein.	0.702
CRE_14303	CRE_21129	E3NEX8	E3MEW1	Uncharacterized protein.	Uncharacterized protein.	0.920
CRE_14303	CRE_26573	E3NEX8	E3LRC5	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.987
CRE_14303	Cre-ash-2	E3NEX8	E3LRL9	Uncharacterized protein.	CRE-ASH-2 protein.	0.986
CRE_14303	Cre-his-31	E3NEX8	E3LKS2	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.952
CRE_14303	Cre-htz-1	E3NEX8	E3M600	Uncharacterized protein.	Histone H2A; Belongs to the histone H2A family.	0.926
CRE_14303	Cre-lin-53	E3NEX8	E3M3S6	Uncharacterized protein.	CRE-LIN-53 protein.	0.901
CRE_14303	Cre-mes-6	E3NEX8	E3NDJ1	Uncharacterized protein.	CRE-MES-6 protein.	0.920
CRE_14303	Cre-rba-1	E3NEX8	E3M3S5	Uncharacterized protein.	CRE-RBA-1 protein.	0.901
CRE_14303	Cre-utx-1	E3NEX8	E3MUE5	Uncharacterized protein.	CRE-UTX-1 protein.	0.816