STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_27152FYVE-type domain-containing protein. (399 aa)    
Predicted Functional Partners:
CRE_20572
Uncharacterized protein.
   
 0.988
CRE_27921
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.988
CRE_18489
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
   
 0.987
CRE_25575
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.987
CRE_03635
Uncharacterized protein.
   
 0.987
CRE_07318
Uncharacterized protein.
   
 0.985
CRE_25710
Foie-gras_1 domain-containing protein.
   
 0.980
Cre-sedl-1
CRE-SEDL-1 protein.
   
 0.973
Cre-zfp-3
CRE-ZFP-3 protein.
   
 0.973
CRE_26054
Trafficking protein particle complex subunit 5; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
    
 0.972
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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