STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cre-ubl-5CRE-UBL-5 protein. (73 aa)    
Predicted Functional Partners:
CRE_08897
Uncharacterized protein.
    
 0.996
Cre-dve-1
CRE-DVE-1 protein.
    
 0.992
Cre-prp-8
CRE-PRP-8 protein.
    
 
 0.987
Cre-mfap-1
CRE-MFAP-1 protein.
    
 0.986
CRE_10556
Uncharacterized protein.
    
 0.984
CRE_26606
U1-type domain-containing protein.
    
 0.961
CRE_11038
Uncharacterized protein.
   
 0.960
CRE_02669
Thioredoxin-like protein; Plays role in pre-mRNA splicing. Belongs to the DIM1 family.
   
  0.958
CRE_29473
Uncharacterized protein.
    
 0.957
Cre-lsm-8
U6 snRNA-associated Sm-like protein LSm8; Plays role in pre-mRNA splicing as component of the U4/U6-U5 tri-snRNP complex that is involved in spliceosome assembly, and as component of the precatalytic spliceosome (spliceosome B complex). The heptameric LSM2-8 complex binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
  0.949
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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