STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cre-bas-1CRE-BAS-1 protein. (529 aa)    
Predicted Functional Partners:
Cre-tph-1
CRE-TPH-1 protein.
   
 0.992
Cre-tbh-1
CRE-TBH-1 protein.
     
 0.978
Cre-cat-2
CRE-CAT-2 protein.
   
 0.969
Cre-pah-1
CRE-PAH-1 protein.
   
 0.965
CRE_16723
Aspartate aminotransferase.
  
 
 0.958
Cre-tatn-1
Tyrosine aminotransferase; Transaminase involved in tyrosine breakdown. Converts tyrosine to p-hydroxyphenylpyruvate.
  
 
 0.958
Cre-tyr-4
CRE-TYR-4 protein.
    
 0.954
CRE_12495
Abhydrolase_3 domain-containing protein.
  
 
 0.954
CRE_04506
Tryptophan 2,3-dioxygenase; Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L- tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.
    
 0.952
CRE_02917
Uncharacterized protein.
     
 0.931
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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