STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_06637Uncharacterized protein. (94 aa)    
Predicted Functional Partners:
Cre-acin-1
CRE-ACIN-1 protein.
   
 0.867
CRE_03767
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.861
CRE_01159
Uncharacterized protein.
   
 0.850
Cre-rnp-4
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.830
CRE_30731
Pinin_SDK_memA domain-containing protein.
   
 0.816
Cre-fipp-1
CRE-FIPP-1 protein.
    
 0.814
Cre-smg-2
CRE-SMG-2 protein.
    
 0.789
CRE_16832
Uncharacterized protein.
    
 0.787
Cre-smg-3
CRE-SMG-3 protein.
    
 0.787
CRE_22185
Upf2 domain-containing protein.
    
 0.787
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.