STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_29876Rab-GAP TBC domain-containing protein. (526 aa)    
Predicted Functional Partners:
CRE_24015
Uncharacterized protein.
    
   0.832
Cre-rab-1
CRE-RAB-1 protein.
    
 
 0.794
CRE_25407
Uncharacterized protein.
    
 
 0.719
CRE_12251
Uncharacterized protein.
    
 
 0.719
CRE_03472
Uncharacterized protein.
    
 
 0.700
Cre-ipla-1
CRE-IPLA-1 protein.
      
 0.676
Cre-mrpl-41
CRE-MRPL-41 protein.
   
   0.673
CRE_25247
Uncharacterized protein.
   
   0.672
CRE_23097
Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.
    
 
 0.660
CRE_11360
MRP-S28 domain-containing protein.
    
   0.657
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.