STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_15572Vps8 domain-containing protein. (1275 aa)    
Predicted Functional Partners:
Cre-vps-39
CRE-VPS-39 protein.
   
 
 0.986
Cre-vps-11
Vacuolar protein sorting-associated protein 11 homolog; Belongs to the VPS11 family.
    
 
 0.984
Cre-vps-18
CRE-VPS-18 protein.
    
 
 0.977
Cre-vps-16
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 
 0.972
Cre-rab-5
CRE-RAB-5 protein.
    
 
 0.944
Cre-vps-33.2
CRE-VPS-33.2 protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.938
Cre-vps-33.1
CRE-VPS-33.1 protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.921
CRE_23102
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 
 0.879
CRE_08252
Uncharacterized protein.
    
 
 0.774
CRE_17073
Uncharacterized protein.
    
 
 0.774
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.