STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_20860DUF3456 domain-containing protein. (175 aa)    
Predicted Functional Partners:
CRE_12564
HATPase_c domain-containing protein.
    
 0.803
CRE_23240
HATPase_c domain-containing protein.
    
 0.803
Cre-tol-1
CRE-TOL-1 protein.
    
 0.749
Cre-daf-21
CRE-DAF-21 protein.
    
 0.745
CRE_16358
Uncharacterized protein.
    
 0.745
Cre-unc-93
CRE-UNC-93 protein.
   
 
 0.712
CRE_06607
ANK_REP_REGION domain-containing protein.
   
 
 0.712
CRE_04008
Uncharacterized protein.
    
  0.687
CRE_10660
Uncharacterized protein.
    
 0.671
Cre-pxn-1
CRE-PXN-1 protein.
    
  0.623
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.