STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_03478Uncharacterized protein; Belongs to the class-I aminoacyl-tRNA synthetase family. (790 aa)    
Predicted Functional Partners:
Cre-rps-30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.999
Cre-mars-1
CRE-MARS-1 protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.999
CRE_09872
tRNA-binding domain-containing protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.999
Cre-rpl-30
CRE-RPL-30 protein.
   
 0.988
Cre-rars-1
CRE-RARS-1 protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 0.987
CRE_15252
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.984
Cre-rpl-38
CRE-RPL-38 protein; Belongs to the eukaryotic ribosomal protein eL38 family.
   
 0.982
Cre-rpl-23
CRE-RPL-23 protein; Belongs to the universal ribosomal protein uL14 family.
  
 0.982
Cre-rpl-31
CRE-RPL-31 protein.
   
 0.981
Cre-rpl-9
CRE-RPL-9 protein.
  
 0.981
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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