STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CRE_08577SprT-like domain-containing protein. (539 aa)    
Predicted Functional Partners:
Cre-tlf-1
CRE-TLF-1 protein.
    
 0.882
Cre-tbp-1
CRE-TBP-1 protein.
    
 0.882
Cre-hint-1
CRE-HINT-1 protein.
    
 0.853
CRE_12375
Uncharacterized protein.
   
  
 0.844
CRE_13367
Uncharacterized protein.
    
 0.828
Cre-nft-1
CRE-NFT-1 protein.
   
 0.811
Cre-hint-3
CRE-HINT-3 protein.
    
 0.809
CRE_20709
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.763
CRE_04012
RNA_pol_Rpb1_5 domain-containing protein.
   
 
 0.735
CRE_15786
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.735
Your Current Organism:
Caenorhabditis remanei
NCBI taxonomy Id: 31234
Other names: C. remanei, Caenorhabditis vulgaris
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